/*******************************************************************************
 * Copyright 2012 Chao Zhang
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 ******************************************************************************/

package org.jbiolib.ncbi.genbank;

import java.util.ArrayList;
import org.jbiolib.ncbi.genpept.NCBIGenPeptFeaturesCDS;
import org.jbiolib.ncbi.genpept.NCBIGenPeptFeaturesGene;
import org.jbiolib.ncbi.genpept.NCBIGenPeptFeaturesProtein;
import org.jbiolib.ncbi.genpept.NCBIGenPeptFeaturesRegion;
import org.jbiolib.ncbi.genpept.NCBIGenPeptFeaturesSite;
import org.jbiolib.ncbi.genpept.NCBIGenPeptFeaturesSource;
import org.jbiolib.ncbi.NCBIReference;

/**
 * @author Chao Zhang
 * @version 1.0 2012-11-06
 */

public class NCBIGenPept {

    private String plocus = "";
    private String locus = "";
    private int length = 0;
    private String modifydate = "";
    private String definition = "";
    private String accession = "";
    private String version = "";
    private String gi = "";
    private String dbsource = "";
    private String keywords = "";    
    private String source = "";
    private String organism = "";
    private String organTaxonomy = "";
    private String comment = "";
    private String dblink = "";
    private ArrayList<NCBIReference> referenceList;
    private NCBIGenPeptFeaturesSource featuresSource;
    private NCBIGenPeptFeaturesGene featureGene;
    private NCBIGenPeptFeaturesProtein featuresProtein;
    private NCBIGenPeptFeaturesCDS featuresCDS;
    private ArrayList<NCBIGenPeptFeaturesRegion> featuresRegion;
    private ArrayList<NCBIGenPeptFeaturesSite> featuresSite;
    private String orgin = "";

    public NCBIGenPept() {
    }

    public String getAccession() {
        return accession;
    }

    public String getComment() {
        return comment;
    }

    public String getDblink() {
        return dblink;
    }

    public String getDbsource() {
        return dbsource;
    }

    public String getDefinition() {
        return definition;
    }

    public NCBIGenPeptFeaturesGene getFeatureGene() {
        return featureGene;
    }

    public NCBIGenPeptFeaturesCDS getFeaturesCDS() {
        return featuresCDS;
    }

    public NCBIGenPeptFeaturesProtein getFeaturesProtein() {
        return featuresProtein;
    }

    public ArrayList<NCBIGenPeptFeaturesRegion> getFeaturesRegion() {
        return featuresRegion;
    }

    public ArrayList<NCBIGenPeptFeaturesSite> getFeaturesSite() {
        return featuresSite;
    }

    public NCBIGenPeptFeaturesSource getFeaturesSource() {
        return featuresSource;
    }

    public String getGi() {
        return gi;
    }

    public String getKeywords() {
        return keywords;
    }

    public int getLength() {
        return length;
    }

    public String getLocus() {
        return locus;
    }

    public String getModifydate() {
        return modifydate;
    }

    public String getOrganTaxonomy() {
        return organTaxonomy;
    }

    public String getOrganism() {
        return organism;
    }

    public String getOrgin() {
        return orgin;
    }

    public String getPlocus() {
        return plocus;
    }

    public ArrayList<NCBIReference> getReferenceList() {
        return referenceList;
    }

    public String getSource() {
        return source;
    }

    public String getVersion() {
        return version;
    }

    public void setAccession(String accession) {
        this.accession = accession;
    }

    public void setComment(String comment) {
        this.comment = comment;
    }

    public void setDblink(String dblink) {
        this.dblink = dblink;
    }

    public void setDbsource(String dbsource) {
        this.dbsource = dbsource;
    }

    public void setDefinition(String definition) {
        this.definition = definition;
    }

    public void setFeatureGene(NCBIGenPeptFeaturesGene featureGene) {
        this.featureGene = featureGene;
    }

    public void setFeaturesCDS(NCBIGenPeptFeaturesCDS featuresCDS) {
        this.featuresCDS = featuresCDS;
    }

    public void setFeaturesProtein(NCBIGenPeptFeaturesProtein featuresProtein) {
        this.featuresProtein = featuresProtein;
    }

    public void setFeaturesRegion(ArrayList<NCBIGenPeptFeaturesRegion> featuresRegion) {
        this.featuresRegion = featuresRegion;
    }

    public void setFeaturesSite(ArrayList<NCBIGenPeptFeaturesSite> featuresSite) {
        this.featuresSite = featuresSite;
    }

    public void setFeaturesSource(NCBIGenPeptFeaturesSource featuresSource) {
        this.featuresSource = featuresSource;
    }

    public void setGi(String gi) {
        this.gi = gi;
    }

    public void setKeywords(String keywords) {
        this.keywords = keywords;
    }

    public void setLength(int length) {
        this.length = length;
    }

    public void setLocus(String locus) {
        this.locus = locus;
    }

    public void setModifydate(String modifydate) {
        this.modifydate = modifydate;
    }

    public void setOrganTaxonomy(String organTaxonomy) {
        this.organTaxonomy = organTaxonomy;
    }

    public void setOrganism(String organism) {
        this.organism = organism;
    }

    public void setOrgin(String orgin) {
        this.orgin = orgin;
    }

    public void setPlocus(String plocus) {
        this.plocus = plocus;
    }

    public void setReferenceList(ArrayList<NCBIReference> referenceList) {
        this.referenceList = referenceList;
    }

    public void setSource(String source) {
        this.source = source;
    }

    public void setVersion(String version) {
        this.version = version;
    }
}
